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In this paper, we propose a classification system which is able to decide whether a company is innovative or not, based only on its public website available on the internet. As innovativeness plays a crucial role in the development of myriad branches of the modern economy, an increasing number of entities are expending effort to be innovative. Thus, a new issue has appeared: how can we recognise them? Not only is grasping the idea of innovativeness challenging for humans, but also impossible for any known machine learning algorithm. Therefore, we propose a new indirect technique: a diversified stacked generalisation method, which is based on a combination of a multi-view approach and a genetic algorithm. The proposed approach achieves better performance than all other classification methods which include: (i) models trained on single datasets; or (ii) a simple voting method on these models. Furthermore, in this study, we check if unaligned feature space improves classification results. The proposed solution has been extensively evaluated on real data collected from companies’ websites. The experimental results verify that the proposed method improves the classification quality of websites which might represent innovative companies.